• Developing OCHROdb, a comprehensive quality checked database of open chromatin regions from sequencing data. Scientific reports 13, 8106 (2023).
• The EBV Gastric Cancer Resource (EBV-GCR): A Suite of Tools for Investigating EBV-Associated Human Gastric Carcinogenesis. Viruses 15, (2023).
• Evaluation of single-cell RNAseq labelling algorithms using cancer datasets. Briefings in bioinformatics 24, (2023).
• Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets. Computational and structural biotechnology journal 20, 6375-6387 (2022).
• Single-Cell Chromatin Accessibility Data Combined with GWAS Improves Detection of Relevant Cell Types in 59 Complex Phenotypes. International journal of molecular sciences 23, (2022).
• TMExplorer: A tumour microenvironment single-cell RNAseq database and search tool. PloS one 17, e0272302 (2022).
• Analysis of TERT Isoforms across TCGA, GTEx and CCLE Datasets. Cancers 13, (2021).
• Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies. Frontiers in immunology 11, 1691 (2020).
• CReSCENT: CanceR Single Cell ExpressioN Toolkit. Nucleic acids research 48, W372-W379 (2020).
• Integrative Genetic and Epigenetic Analysis Uncovers Regulatory Mechanisms of Autoimmune Disease. American journal of human genetics 101, 75-86 (2017).
• Network Analysis of Genome-Wide Selective Constraint Reveals a Gene Network Active in Early Fetal Brain Intolerant of Mutation. PLoS genetics 12, e1006121 (2016).
• Flow cytometry data standards. BMC research notes 4, 50 (2011).
• Data reduction for spectral clustering to analyze high throughput flow cytometry data. BMC bioinformatics 11, 403 (2010).
• Correlation analysis of intracellular and secreted cytokines via the generalized integrated mean fluorescence intensity. Cytometry. Part A : the journal of the International Society for Analytical Cytology 77, 873-80 (2010).