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Medical Bioinformatics @Western
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Seminars
Using Al to assist clinical decision-making in pathology and precision medicine
01 Feb 2024 Zhi Huang, PhD
HIV reservoir establishment and persistence in the Rakai cohort, Uganda
23 Feb 2024 Dr. Edward Kankaka
Entering the Platinum Age of Virus Discovery
08 Mar 2024 Dr. Artem Babian
Insights into brain disease etiology from genetic and genomic "big data"
20 Mar 2024 Dr. Michael Wainberg
A proportionality index (PIP) as a measure of association of parts in compositional data
20 Mar 2024 Dr. Juan José Egozcue
The Challenges in Performing Statistical Tests on Large-Scale Genomic Data Sets
19 Apr 2024 Dr. Xuekui Zhang
Machine Learning and Brain Epigenomes for Precision Medicine
10 May 2024 Dr. Shraddha Pai
30 May 2024 Dr. Amjad Khan
Papers
Mitochondrial DNA Copy Number and Heteroplasmy in Monozygotic Twins Discordant for Schizophrenia.
Published 01 Sep 2023
Developing OCHROdb, a comprehensive quality checked database of open chromatin regions from sequencing data.
Published 19 May 2023
The EBV Gastric Cancer Resource (EBV-GCR): A Suite of Tools for Investigating EBV-Associated Human Gastric Carcinogenesis.
Published 28 Apr 2023
HexSE: Simulating evolution in overlapping reading frames.
Published 28 Feb 2023
Clustering Highly Divergent Homologous Proteins: An Alignment-Free Method.
Published 23 Feb 2023
bayroot: Bayesian sampling of HIV-1 integration dates by root-to-tip regression.
Published 13 Jan 2023
Evaluation of single-cell RNAseq labelling algorithms using cancer datasets.
Published 01 Jan 2023
Optimized phylogenetic clustering of HIV-1 sequence data for public health applications.
Published 01 Dec 2022
Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets.
Published 25 Nov 2022
Mitochondrial genomic integrity and the nuclear epigenome in health and disease.
Published 25 Nov 2022
Faculty
Tallulah Andrews
Assistant Professor
Integration of biological imaging and multiple -omics technologies to understand the structure of diseased tissues.
Pingzhao Hu
Associate Professor
Developing and applying computational and statistical techniques for integrative analysis of big multimodal health data for precision medicine.
Jennifer Guthrie
Assistant Professor
Combining bioinformatics, epidemiology, public health, genomics and microbiology to predict antimicrobial resistance, disease transmission and outbreaks.
Greg Gloor
Professor
Compositional data analysis and functional characterization of microbiomes.
Christina Castellani
Assistant Professor
Contribution of mitochondrial nuclear multiomic signalling to cardiovascular disease using bioinformatic approaches.
Art Poon
Professor
Development of computational methods to reconstruct the evolution and epidemiology of human RNA viruses.
Parisa Shooshtari
Assistant Professor
Developing computational, statistical and machine learning methods to understand cellular and molecular mechanisms underlying complex diseases.
Mike Hallett
Professor
Computational biology and bioinformatic approaches to biomarkers based on multi-variate, multi-modal gene signatures, especially in the context of cancer.
Vanessa Dumeaux
Assistant Professor
Genomics and computational approaches to understand the molecular aspects of human physiology and disease incidence/prognosis in the context of the individual (e.g. immune response, microbiome).